Other Sequencing of Klebsiella pneumoniae subsp. pneumoniae - SRA

SRX7405025: Other Sequencing of Klebsiella pneumoniae subsp. pneumoniae
1 OXFORD_NANOPORE (MinION) run: 31,516 spots, 134.6M bases, 105.3Mb downloads

Design: whole genomic sequencing using Oxford Nanopore MinION

Submitted by: JCVI

Study: Klebsiella pneumoniae Genome sequencing and assembly

PRJNA433394 • SRP132707 • All experiments • All runs

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These isolates constitute part 2 part series of isolates in partial fulfillment of the aims from an R21 proposal with Drs. Bonomo and VanDuin from the ARLG. ~200 isolates total when both runs are completed.Specific Aim 1: To discover molecular characteristics that are associated with poor clinical outcomes in patients infected with ST258 strains of CRKP.Specific Aim 2: To study the mechanisms and clinical impact of tigecycline and colistin resistance in CRKP strains.

Sample:

SAMN10432823 • SRS5852599 • All experiments • All runs

Organism: Klebsiella pneumoniae subsp. pneumoniae

Library:

Name: ARLG-3135

Instrument: MinION

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 31,516 spots, 134.6M bases, 105.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR10728903	31,516	134.6M	105.3Mb	2019-12-18

ID:: 9691501

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